>Publications

Peterson, L.E., Coleman, M.A.  Machine learning-based receiver operating characteristic (ROC) curves for crisp and fuzzy classification of DNA microarrays in cancer research.  Int. J. of Approximate Reasoning.  (In press).

Peterson, L.E.,  Miller, R.L.  Association Between Radioactive Fallout From 1951-62 US Nuclear Tests At The Nevada Test Site and Cancer Mortality in Midwestern US Populations.  Russian Journal of Ecology.  (In press).

Peterson, L.E., Hoogeveen, R.C., Pownall, H.J., Morrisett, J.D.  Classification Analysis of Surface-enhanced Laser Desorption/Ionization Mass Spectral Serum Profiles for Prostate Cancer.   IJCNN '06. International Joint Conference on Neural Networks, pp. 3828- 3835, 16-21 July 2006.

Chen, S., Iverson, E.S., Friebel, T., Finkelstein, D., Weber, B.L., Eisen, A., Peterson, L.E., Schildkraut, J.M., Isaacs, C., Peshkin, B.N., Corio, C., Leondaridis, L., Tomlinson, G., Dutson, D., Kerber, R., Amos, C.I., Strong, L.C., Berry, D.A., Euhus, D.M., Parmigiani, G.  Characterization of BRCA1 and BRCA2 Mutations in a Large US Sample.  J. Clin. Oncology.  24(6):863-71; 2006.

Lalani, S.R., Safiullah, A.A., Fernbach, S.D., Harutyunyan, K.G., Thaller, C., Peterson, L.E., McPherson, J.D., Gibbs, R.A., White, L.D., Hefner, M., Davenport, S.L.H., Graham Jr., J.M., Bacino, C.A., Glass, N.L., Towbin, J.A., Craigen, W.J., Neish, S.R., Lin, A.E., Belmont, J.W.   Spectrum of CHD7 mutations in 110 individuals with CHARGE syndrome and genotype-phenotype correlation.  Am. J. Hum. Genet. 78(2):303-14; 2006.

Peterson, L.E., Coleman, M.A.  Comparison of Gene Identification Based on Artificial Neural Network Pre-processing With K-means Cluster and Principal Component Analysis. Lecture Notes in Artificial Intelligence. 3849: 267-276; 2006.

Peterson, L.E., Ozen, M., Erdem, H., Amini, A., Gomez, L., Nelson, C.C., Ittmann, M.  Artificial Neural Network Analysis of DNA Microarray-based Prostate Cancer Recurrence. Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. IEEE Computational Intelligence Society. 

Coleman, M.A., Yin, E., Peterson, L.E., Nelson, D.O., Sorensen, K., Tucker, J., Wyrobeck, A.J.  Exposure of Human Lymphoblastoid Cells to Low-dose Ionizing Radiation Modulates Genes With Both a Primary Dose Effect and a Subset Correlated With Cytogenetic Radioadaptation. Radiation Research. 164(4):369-382; 2005.

Al-Lamki, Z., Wali, Y.A., Wasifuddin, S.M., Zachariah, M., Al-Mjeni, R., Li, C., Muralitharan, S., Al-Kharusi, K., Gunaratne, P., Peterson, L.E., Gibbs, R., Gingras, M.C., Margolin, J.F.  Identification of prognosis markers in pediatric high-risk acute lymphoblastic leukemia.  Pediatr. Hematol. Oncol. 22(7): 629-643; 2005.
 
Mao, J-H, Li, J., Jiang, T., Wu, D., Perez-Losada, J., Delrosario, R., Peterson, L.E., Balmain, A., Cai, W-W. Genomic Signatures for Radiation-induced Mouse Lymphoma. Oncogene.  24(53): 7924-7934; 2005.

McClain, K.L., Cai, Y.H., Hicks, J., Peterson, L.E., Yan, X.T., Che, S., Ginsberg, S.D.  Expression Profiling Using Human Tissues in Combination With RNA Amplification and Microarray Analysis: Assessment of Langerhans Cell Histiocytosis. Amino Acids. 28(3):279-290; 2005.

Friedman, L.C., Brown, A.E., Romero, C.,Dulay, M.F., Peterson, L.E., Wehrman, P., Whisnand, D.J., Laufman, L., Lomax, J.  Depressed Mood and Social Support As Predictors of Quality of Life in Women Receiving Home Health Care. Quality of Life Research. 14:1925-1929; 2005.

Ng, B., Yang, F., Huston, D.P., Yan, Y., Yang, Y., Xiong, Z., Peterson, L.E., Wang, H., Yang, X-F. Increased non-canonical splicing of autoantigen transcripts provides the structural basis for expression of untolerized epitopes. Journal of Allergy and Clinical Immunology. 114(6):1463-1470; 2004.

Cucinotta, F.A., Schimmerling, W., Wilson, J.W., Peterson, L.E., Saganti, P.B., Dicello, J.F.  Uncertainties in estimates of the risks of late effects from space radiation. Advances in Space Research. 34(6):1383-1389. 01 Oct 2004.

Li, J., Tao, J., Mao, J-H, Balmain, A., Peterson, L.E., Rao, P.H., Havlak, P., Gibbs, R., Cai, W-W.  Genomic segmental polymorphisms in inbred mouse strains detected using whole genome BAC arrays. Nature Genetics. 36(9):952-954. 20 Aug 2004.

Pivovarov, S., Ruhkin, A., Seredavina, T., Peterson, L., Gorelkinskii, Y., Temirbaev, M.  Experimental study of EPR in Q-band capabilities for tooth enamel dosimetry on intact dens. In: Environmental Protection Against Radioactive Pollution (Eds. Birsen, N., Kadyrzhanov, K.K.). Dordrecht(Netherlands), Kluwer Academic Publishers. 31 Dec 2003.

Yin, E., Nelson, D. O., Coleman, M. A., Peterson, L. E., and Wyrobek, A. J.  Gene expression changes in mouse brain after exposure to low-dose ionizing radiation. Int. J. Radiat. Biology. 79(10):759-775. 30 Oct 2003.

Polnaszek, N., Kwabi-Addo, B., Peterson, L.E., Ozen, M., Greenberg, N., Ortega, S., Basilico, C. and Ittmann, M.  FGF2 promotes tumor progression in an autochthonous mouse model of prostate cancer. Cancer Research. 63:5754-5760. 15 Sep 2003.

Qiu, J., Gunaratne, P., Peterson, L.E., Khurana, D., Walsham, N., Loulseged, H., Karni, R.J., Roussel E., Gibbs, R.A., Margolin, J.F., Gingras, M.C.   Novel potential ALL low-risk markers revealed by gene expression profiling with new high throughput SSH-CCS-PCR. Leukemia. 17:1891-1900. 10 Sep 2003.

Hwang, I-R, Hsu, P.I., Peterson, L.E., Gutierrez, O., Kim, J.G., Graham, D.Y., Yamaoka, Y.  Interleukin-6 genetic polymorphisms are not related to Helicobacter pylori-associated gastroduodenal diseases. Helicobacter. 8(2):142-148. 8 Apr 2003.

Peterson, L.E.  Partitioning large-sample microarray-based gene expression profiles using principal components analysis. Computer Methods and Programs in Biomedicine. 70(2):107-119. 1 Mar 2003.

Hwang, I-R., Kodama, T., Kikuchi, S., Sakai, K., Peterson, L.E., Graham, D.Y., Yamaoka, Y.  Effect of interleukin-1beta polymorphisms on gastric mucosal interleukin-1beta production in Helicobacter Pylori infection. Gastroenterology. 123(6):1793-1803. 15 Dec 2002.

Peterson, L.E. Factor analysis of cluster-specific gene expression levels from cDNA microarrays. Computer Methods and Programs in Biomedicine. 69(3):179-188. 1 Dec 2002.

Peterson L.E.  Software Report: CLUSFAVOR 5.0: hierarchical cluster and principal component analysis of microarray-based transcriptional profiles. Genome Biology. 3(7):software 1-8. 24 Jun 2002.

Carlson, N., Lechago, J., Richter, J., Sampliner, R.E., Peterson, L.E., Santella, R.M., Goldblum, J.R., Falk, G.W., Ertan, A., Younes, M.  Acid suppression therapy may not alter malignant progression in Barrett's metaplasia showing p53 protein accumulation. American Journal of Gastroenterology. 97(6):1340-1345. 16 Jun 2002.

Sepulveda, A.R., Peterson, L.E., Shelton, J., Gutierrez, O., Graham, D.Y.  Histological patterns of gastritis in H. pylori infected individuals with family history of gastric cancer. American Journal of Gastroenterology. 97(6):1365-1370. 16 Jun 2002.

Peterson, L.E., Lau, K.  Observation of intermittency in gene expression on cDNA microarrays. Genome Biology. 3(7):preprint 1-5. 16 Jun 2002.

Sepulveda, A.R., Tao, H., Carloni, E., Sepulveda, J., Graham, D.Y., Otten, K., Gasbarrini, A., Peterson, L.E.  Screening of gene expression profiles in gastric epithelial cells induced by Helicobacter pylori using microarray analysis. Alimentary Pharmacology and Therapeutics. 16(Suppl 2):145-157. April 2002.

Cucinotta, F.A., Schimmerling, W. Wilson, J.W., Peterson, L.E., Badhwar, G., Saganti, P., Dicello, J.F.  Space radiation cancer risks and uncertainties for Mars missions. Radiation Research. 156:682-688. November 2001.

Ponomarev, A.L., Cucinotta, F.A., Sachs, R.K., Brenner, D.J., Peterson, L.E.  Extrapolation of the DNA fragment-size distribution in a high-dose PFGE assay to low doses. Radiation Research. 156:594-597. November 2001.

Carlsen,T.M, Peterson, L.E., Ulsh, B.A.  Radionuclide Contamination At Kazakhstan's Semipalatinsk Test Site: Implications on Human and Ecological Health. Human and Ecological Risk Assessment. 7(4):943-955. August 2001.

Medina, D., Peterson, L.E., Moraes, R., Gay, J.  Short-term exposure to estrogen and progesterone induces partial protection against NMU-induced mammary tumorigenesis in Wistar-Furth rats. Cancer Letters. 169(1):1-6. June 2001.

Friedman, L.C., Everett, T.E., Peterson, L.E., Ogbonnaya, K.I., Mendizabal, V.  Compliance with self-administered fecal occult blood test screening among low-income medical outpatients participating in a videotaped educational intervention. Journal of Cancer Education. 16:85-88. April 2001.

Peterson, L.E., Bondar, A.Y., Volguina, I.V., Drozdova, V.D., Noschenko, A.D., Dreyer, Z.E., Weinberg, A.D.  Case-control study of leukemia and environmental radiation fallout from the Chernobyl accident: Selection of hospital cases and multistage area probability sampling (MAPS) of controls in urban and rural Ukraine. Cancer Research, Therapy and Control. 11(2):113-124. 01 Mar 2001.

Plon, S.E., Peterson, L.E., Richards, C.S., Friedman, L.C.  Mammography behavior after receiving a negative BRCA1 mutation test result in the Ashkenazim: A community-based study. Genetics in Medicine. 2(6):307-311. 18 Dec 2000.

Hayes, T.G., Peterson, L.E., Volguina, I.V., Rozin S., Tesch, P., Weinberg, A.D.  Establishment of a cancer registry in Semipalatinsk, Kazakhstan. Journal of Registry Management. 27(1):15-19. 2000.

Cucinotta, F.A., Peterson, L.E.  Progress in Predicting and Mitigating Health Risks of Space Radiation. In: Space Physiology and Medicine (4th Edition). Nicogossian A.E., Pool, S.L., and Huntoon, C.L., eds. 2000.

Peterson, L.E., Cucinotta, F.A.  Monte Carlo mixture model of lifetime cancer incidence risk from radiation exposure on shuttle and international space station. Mutation Research. 430(2):327-35. December 1999.

Page G.P., King T.M., Barnholtz, J.S., de Andrade M., Peterson, L.E., Amos C.I.  Genome scans for genetic predisposition to alcoholism by use of transmission disequilibrium test analyses. Genetic Epidemiology. 17 Suppl 1:S277-81. 1999. Abstract

Peterson, L.E., Barnholtz, J.S., Page, G.P., King, T.M., de Andrade, M., Amos, C.I.  A genome-wide search for susceptibility genes linked to alcohol dependence. Genetic Epidemiology. 17 Suppl 1:S295-300. 1999. Abstract

Barnholtz, J.S., de Andrade, M., Page, G.P., King, T.M., Peterson, L.E., Amos, C.I.  Assessing linkage of monoamine oxidase B in a genome-wide scan using a univariate variance components approach. Genetic Epidemiology. 17 Suppl 1:S49-54. 1999. Abstract

Hayes, T.G., Peterson, L.E., Weinberg, A.D.  Implementation of Guidelines for the Diagnosis and Treatment of Breast Cancer. Disease Management and Health Outcomes. 3(5):239-250. 1998.

Peterson, L.E., Zhumadilov, Z.Z., Kripalani,S., Prouglo,Y.V., Wheeler, T.M., Gusev, B.I., Arem, R., Yonov, S., Weinberg, A.D.  Diagnosis of benign and malignant thyroid disease in the East Kazakhstan Region of Kazakhstan: A case review of pathological findings of 2525 patients. Cancer Research, Therapy and Control. 5(4):307-312. 1998.

Eds, Peterson, L.E.,  Abrahamson, S.  Effects of Ionizing Radiation: Atomic Bomb Survivors and Their Children (1945-95). 1998.  Joseph Henry Press (National Academy Press), Washington, D.C., 1998.

Peterson, L.E.  PIRLS: Poisson iteratively reweighted least squares computer program for additive, multiplicative, power, and non-linear models. Journal of Statistical Software. 2(5):1997.

Peterson, L.E.  COVAR: Computer program for multifactor relative risks and tests of hypothesis using a variance-covariance matrix from linear and log-linear regression. Journal of Statistical Software. 2(4):1997.

Plon, S.E., Peterson, L.E.  Childhood Cancer, Heredity, and the Environment, Chap. 2. Principles and Practice of Pediatric Oncology (Eds, Pizzo, P.A., Poplack, D.G.). 1997.

Peterson L.E., Dreyer, Z.E., Plon, S.E., Smith, J.L., Weinberg, A.D., McCarthy, P.L.  Design and analysis of epidemiological studies of excess cancer among children exposed to Chernobyl radionuclides. Stem Cells. 15(S-2):211-30. 1997.

Atwell, W., Hardy, A.C., Peterson, L.E.  Organ radiation doses and excess lifetime risks of cancer for several Shuttle missions. Advances in Space Research. 18(12):139-148. 1996.

Peterson, L.E., Schull, W.J., Davis, B.R., Buffler, P.A.  Information bias and lifetime mortality risks of radiation-induced cancer. U.S. Nuclear Regulatory Commission, NUREG GR-0011. April 1994.

Peterson, L.E., Pepper, L.J., Hamm, P.B., Gilbert, S.L.   Longitudinal Study of Astronaut Health: Mortality in the Years 1959-91. Radiation Research. 133:257-264. 1993.

Cascade, P.A., Peterson, L.E., Wajszczuk, W.J., Mantel, J.  Radiation exposure to patients undergoing percutaneous transluminal coronary angioplasty. American Journal of Cardiology. 59:996-7. 1987.